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BRIDGE Lab Documentation
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  1. Image Analysis
  2. Native Space Analysis
  3. Segmentation

Freesurfer

Last updated 11 months ago

Freesurfer is a tool that algorithmically segments structural T1 images.

is extensive and includes installation instructions, command documentation, and tutortials.

Whole brain Freesurfer segmentation can be done with the following command:

recon-all -all -i [path]/T1.nii -s subj1
🖼️
The Freesurfer user guide