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  1. Image Analysis
  2. Native Space Analysis
  3. Segmentation

Freesurfer

Last updated 9 months ago

Freesurfer is a tool that algorithmically segments structural T1 images.

The Freesurfer user guide is extensive and includes installation instructions, command documentation, and tutortials.

Whole brain Freesurfer segmentation can be done with the following command:

recon-all -all -i [path]/T1.nii -s subj1
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